Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana.
Identifieur interne : 002B37 ( Main/Exploration ); précédent : 002B36; suivant : 002B38Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana.
Auteurs : Susanne Pfefferle [Allemagne] ; Samuel Oppong ; Jan Felix Drexler ; Florian Gloza-Rausch ; Anne Ipsen ; Antje Seebens ; Marcel A. Müller ; Augustina Annan ; Peter Vallo ; Yaw Adu-Sarkodie ; Thomas F. Kruppa ; Christian DrostenSource :
- Emerging infectious diseases [ 1080-6059 ] ; 2009.
Descripteurs français
- KwdFr :
- ARN viral (analyse), ARN viral (isolement et purification), Analyse de séquence d'ADN, Animaux, Chiroptera (virologie), Coronavirus (), Coronavirus (génétique), Coronavirus (isolement et purification), Coronavirus humain 229E (), Coronavirus humain 229E (génétique), Données de séquences moléculaires, Femelle, Fèces (virologie), Ghana, Humains, Mâle, Phylogénie, RNA replicase (génétique), Virus du SRAS (), Virus du SRAS (génétique).
- MESH :
- analyse : ARN viral.
- génétique : Coronavirus, Coronavirus humain 229E, RNA replicase, Virus du SRAS.
- isolement et purification : ARN viral, Coronavirus.
- virologie : Chiroptera, Fèces.
- Analyse de séquence d'ADN, Animaux, Coronavirus, Coronavirus humain 229E, Données de séquences moléculaires, Femelle, Ghana, Humains, Mâle, Phylogénie, Virus du SRAS.
- Wicri :
- geographic : Ghana.
English descriptors
- KwdEn :
- Animals, Chiroptera (virology), Coronavirus (classification), Coronavirus (genetics), Coronavirus (isolation & purification), Coronavirus 229E, Human (classification), Coronavirus 229E, Human (genetics), Feces (virology), Female, Ghana, Humans, Male, Molecular Sequence Data, Phylogeny, RNA Replicase (genetics), RNA, Viral (analysis), RNA, Viral (isolation & purification), SARS Virus (classification), SARS Virus (genetics), Sequence Analysis, DNA.
- MESH :
- chemical , analysis : RNA, Viral.
- chemical , genetics : RNA Replicase.
- chemical , isolation & purification : RNA, Viral.
- geographic : Ghana.
- classification : Coronavirus, Coronavirus 229E, Human, SARS Virus.
- genetics : Coronavirus, Coronavirus 229E, Human, SARS Virus.
- isolation & purification : Coronavirus.
- virology : Chiroptera, Feces.
- Animals, Female, Humans, Male, Molecular Sequence Data, Phylogeny, Sequence Analysis, DNA.
Abstract
We tested 12 bat species in Ghana for coronavirus (CoV) RNA. The virus prevalence in insectivorous bats (n = 123) was 9.76%. CoV was not detected in 212 fecal samples from Eidolon helvum fruit bats. Leaf-nosed bats pertaining to Hipposideros ruber by morphology had group 1 and group 2 CoVs. Virus concentrations were < or =45,000 copies/100 mg of bat feces. The diversified group 1 CoV shared a common ancestor with the human common cold virus hCoV-229E but not with hCoV-NL63, disputing hypotheses of common human descent. The most recent common ancestor of hCoV-229E and GhanaBt-CoVGrp1 existed in approximately 1686-1800 ad. The GhanaBt-CoVGrp2 shared an old ancestor (approximately 2,400 years) with the severe acute respiratory syndrome-like group of CoV.
DOI: 10.3201/eid1509.090224
PubMed: 19788804
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 001820
- to stream PubMed, to step Curation: 001820
- to stream PubMed, to step Checkpoint: 001894
- to stream Ncbi, to step Merge: 002005
- to stream Ncbi, to step Curation: 002005
- to stream Ncbi, to step Checkpoint: 002005
- to stream Main, to step Merge: 002B88
- to stream Main, to step Curation: 002B37
Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana.</title><author><name sortKey="Pfefferle, Susanne" sort="Pfefferle, Susanne" uniqKey="Pfefferle S" first="Susanne" last="Pfefferle">Susanne Pfefferle</name><affiliation wicri:level="3"><nlm:affiliation>Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bernhard Nocht Institute for Tropical Medicine, Hamburg</wicri:regionArea><placeName><settlement type="city">Hambourg</settlement><region type="land" nuts="2">Hambourg</region></placeName></affiliation></author><author><name sortKey="Oppong, Samuel" sort="Oppong, Samuel" uniqKey="Oppong S" first="Samuel" last="Oppong">Samuel Oppong</name></author><author><name sortKey="Drexler, Jan Felix" sort="Drexler, Jan Felix" uniqKey="Drexler J" first="Jan Felix" last="Drexler">Jan Felix Drexler</name></author><author><name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name></author><author><name sortKey="Ipsen, Anne" sort="Ipsen, Anne" uniqKey="Ipsen A" first="Anne" last="Ipsen">Anne Ipsen</name></author><author><name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name></author><author><name sortKey="Muller, Marcel A" sort="Muller, Marcel A" uniqKey="Muller M" first="Marcel A" last="Müller">Marcel A. Müller</name></author><author><name sortKey="Annan, Augustina" sort="Annan, Augustina" uniqKey="Annan A" first="Augustina" last="Annan">Augustina Annan</name></author><author><name sortKey="Vallo, Peter" sort="Vallo, Peter" uniqKey="Vallo P" first="Peter" last="Vallo">Peter Vallo</name></author><author><name sortKey="Adu Sarkodie, Yaw" sort="Adu Sarkodie, Yaw" uniqKey="Adu Sarkodie Y" first="Yaw" last="Adu-Sarkodie">Yaw Adu-Sarkodie</name></author><author><name sortKey="Kruppa, Thomas F" sort="Kruppa, Thomas F" uniqKey="Kruppa T" first="Thomas F" last="Kruppa">Thomas F. Kruppa</name></author><author><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2009">2009</date><idno type="RBID">pubmed:19788804</idno><idno type="pmid">19788804</idno><idno type="doi">10.3201/eid1509.090224</idno><idno type="wicri:Area/PubMed/Corpus">001820</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Corpus" wicri:corpus="PubMed">001820</idno><idno type="wicri:Area/PubMed/Curation">001820</idno><idno type="wicri:explorRef" wicri:stream="PubMed" wicri:step="Curation">001820</idno><idno type="wicri:Area/PubMed/Checkpoint">001894</idno><idno type="wicri:explorRef" wicri:stream="Checkpoint" wicri:step="PubMed">001894</idno><idno type="wicri:Area/Ncbi/Merge">002005</idno><idno type="wicri:Area/Ncbi/Curation">002005</idno><idno type="wicri:Area/Ncbi/Checkpoint">002005</idno><idno type="wicri:Area/Main/Merge">002B88</idno><idno type="wicri:Area/Main/Curation">002B37</idno><idno type="wicri:Area/Main/Exploration">002B37</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana.</title><author><name sortKey="Pfefferle, Susanne" sort="Pfefferle, Susanne" uniqKey="Pfefferle S" first="Susanne" last="Pfefferle">Susanne Pfefferle</name><affiliation wicri:level="3"><nlm:affiliation>Bernhard Nocht Institute for Tropical Medicine, Hamburg, Germany.</nlm:affiliation><country xml:lang="fr">Allemagne</country><wicri:regionArea>Bernhard Nocht Institute for Tropical Medicine, Hamburg</wicri:regionArea><placeName><settlement type="city">Hambourg</settlement><region type="land" nuts="2">Hambourg</region></placeName></affiliation></author><author><name sortKey="Oppong, Samuel" sort="Oppong, Samuel" uniqKey="Oppong S" first="Samuel" last="Oppong">Samuel Oppong</name></author><author><name sortKey="Drexler, Jan Felix" sort="Drexler, Jan Felix" uniqKey="Drexler J" first="Jan Felix" last="Drexler">Jan Felix Drexler</name></author><author><name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name></author><author><name sortKey="Ipsen, Anne" sort="Ipsen, Anne" uniqKey="Ipsen A" first="Anne" last="Ipsen">Anne Ipsen</name></author><author><name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name></author><author><name sortKey="Muller, Marcel A" sort="Muller, Marcel A" uniqKey="Muller M" first="Marcel A" last="Müller">Marcel A. Müller</name></author><author><name sortKey="Annan, Augustina" sort="Annan, Augustina" uniqKey="Annan A" first="Augustina" last="Annan">Augustina Annan</name></author><author><name sortKey="Vallo, Peter" sort="Vallo, Peter" uniqKey="Vallo P" first="Peter" last="Vallo">Peter Vallo</name></author><author><name sortKey="Adu Sarkodie, Yaw" sort="Adu Sarkodie, Yaw" uniqKey="Adu Sarkodie Y" first="Yaw" last="Adu-Sarkodie">Yaw Adu-Sarkodie</name></author><author><name sortKey="Kruppa, Thomas F" sort="Kruppa, Thomas F" uniqKey="Kruppa T" first="Thomas F" last="Kruppa">Thomas F. Kruppa</name></author><author><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name></author></analytic><series><title level="j">Emerging infectious diseases</title><idno type="eISSN">1080-6059</idno><imprint><date when="2009" type="published">2009</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass><keywords scheme="KwdEn" xml:lang="en"><term>Animals</term><term>Chiroptera (virology)</term><term>Coronavirus (classification)</term><term>Coronavirus (genetics)</term><term>Coronavirus (isolation & purification)</term><term>Coronavirus 229E, Human (classification)</term><term>Coronavirus 229E, Human (genetics)</term><term>Feces (virology)</term><term>Female</term><term>Ghana</term><term>Humans</term><term>Male</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>RNA Replicase (genetics)</term><term>RNA, Viral (analysis)</term><term>RNA, Viral (isolation & purification)</term><term>SARS Virus (classification)</term><term>SARS Virus (genetics)</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="KwdFr" xml:lang="fr"><term>ARN viral (analyse)</term><term>ARN viral (isolement et purification)</term><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Chiroptera (virologie)</term><term>Coronavirus ()</term><term>Coronavirus (génétique)</term><term>Coronavirus (isolement et purification)</term><term>Coronavirus humain 229E ()</term><term>Coronavirus humain 229E (génétique)</term><term>Données de séquences moléculaires</term><term>Femelle</term><term>Fèces (virologie)</term><term>Ghana</term><term>Humains</term><term>Mâle</term><term>Phylogénie</term><term>RNA replicase (génétique)</term><term>Virus du SRAS ()</term><term>Virus du SRAS (génétique)</term></keywords><keywords scheme="MESH" type="chemical" qualifier="analysis" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="chemical" qualifier="genetics" xml:lang="en"><term>RNA Replicase</term></keywords><keywords scheme="MESH" type="chemical" qualifier="isolation & purification" xml:lang="en"><term>RNA, Viral</term></keywords><keywords scheme="MESH" type="geographic" xml:lang="en"><term>Ghana</term></keywords><keywords scheme="MESH" qualifier="analyse" xml:lang="fr"><term>ARN viral</term></keywords><keywords scheme="MESH" qualifier="classification" xml:lang="en"><term>Coronavirus</term><term>Coronavirus 229E, Human</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="genetics" xml:lang="en"><term>Coronavirus</term><term>Coronavirus 229E, Human</term><term>SARS Virus</term></keywords><keywords scheme="MESH" qualifier="génétique" xml:lang="fr"><term>Coronavirus</term><term>Coronavirus humain 229E</term><term>RNA replicase</term><term>Virus du SRAS</term></keywords><keywords scheme="MESH" qualifier="isolation & purification" xml:lang="en"><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="isolement et purification" xml:lang="fr"><term>ARN viral</term><term>Coronavirus</term></keywords><keywords scheme="MESH" qualifier="virologie" xml:lang="fr"><term>Chiroptera</term><term>Fèces</term></keywords><keywords scheme="MESH" qualifier="virology" xml:lang="en"><term>Chiroptera</term><term>Feces</term></keywords><keywords scheme="MESH" xml:lang="en"><term>Animals</term><term>Female</term><term>Humans</term><term>Male</term><term>Molecular Sequence Data</term><term>Phylogeny</term><term>Sequence Analysis, DNA</term></keywords><keywords scheme="MESH" xml:lang="fr"><term>Analyse de séquence d'ADN</term><term>Animaux</term><term>Coronavirus</term><term>Coronavirus humain 229E</term><term>Données de séquences moléculaires</term><term>Femelle</term><term>Ghana</term><term>Humains</term><term>Mâle</term><term>Phylogénie</term><term>Virus du SRAS</term></keywords><keywords scheme="Wicri" type="geographic" xml:lang="fr"><term>Ghana</term></keywords></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">We tested 12 bat species in Ghana for coronavirus (CoV) RNA. The virus prevalence in insectivorous bats (n = 123) was 9.76%. CoV was not detected in 212 fecal samples from Eidolon helvum fruit bats. Leaf-nosed bats pertaining to Hipposideros ruber by morphology had group 1 and group 2 CoVs. Virus concentrations were < or =45,000 copies/100 mg of bat feces. The diversified group 1 CoV shared a common ancestor with the human common cold virus hCoV-229E but not with hCoV-NL63, disputing hypotheses of common human descent. The most recent common ancestor of hCoV-229E and GhanaBt-CoVGrp1 existed in approximately 1686-1800 ad. The GhanaBt-CoVGrp2 shared an old ancestor (approximately 2,400 years) with the severe acute respiratory syndrome-like group of CoV.</div></front></TEI><affiliations><list><country><li>Allemagne</li></country><region><li>Hambourg</li></region><settlement><li>Hambourg</li></settlement></list><tree><noCountry><name sortKey="Adu Sarkodie, Yaw" sort="Adu Sarkodie, Yaw" uniqKey="Adu Sarkodie Y" first="Yaw" last="Adu-Sarkodie">Yaw Adu-Sarkodie</name><name sortKey="Annan, Augustina" sort="Annan, Augustina" uniqKey="Annan A" first="Augustina" last="Annan">Augustina Annan</name><name sortKey="Drexler, Jan Felix" sort="Drexler, Jan Felix" uniqKey="Drexler J" first="Jan Felix" last="Drexler">Jan Felix Drexler</name><name sortKey="Drosten, Christian" sort="Drosten, Christian" uniqKey="Drosten C" first="Christian" last="Drosten">Christian Drosten</name><name sortKey="Gloza Rausch, Florian" sort="Gloza Rausch, Florian" uniqKey="Gloza Rausch F" first="Florian" last="Gloza-Rausch">Florian Gloza-Rausch</name><name sortKey="Ipsen, Anne" sort="Ipsen, Anne" uniqKey="Ipsen A" first="Anne" last="Ipsen">Anne Ipsen</name><name sortKey="Kruppa, Thomas F" sort="Kruppa, Thomas F" uniqKey="Kruppa T" first="Thomas F" last="Kruppa">Thomas F. Kruppa</name><name sortKey="Muller, Marcel A" sort="Muller, Marcel A" uniqKey="Muller M" first="Marcel A" last="Müller">Marcel A. Müller</name><name sortKey="Oppong, Samuel" sort="Oppong, Samuel" uniqKey="Oppong S" first="Samuel" last="Oppong">Samuel Oppong</name><name sortKey="Seebens, Antje" sort="Seebens, Antje" uniqKey="Seebens A" first="Antje" last="Seebens">Antje Seebens</name><name sortKey="Vallo, Peter" sort="Vallo, Peter" uniqKey="Vallo P" first="Peter" last="Vallo">Peter Vallo</name></noCountry><country name="Allemagne"><region name="Hambourg"><name sortKey="Pfefferle, Susanne" sort="Pfefferle, Susanne" uniqKey="Pfefferle S" first="Susanne" last="Pfefferle">Susanne Pfefferle</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Sante/explor/SrasV1/Data/Main/Exploration
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 002B37 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd -nk 002B37 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Sante
|area= SrasV1
|flux= Main
|étape= Exploration
|type= RBID
|clé= pubmed:19788804
|texte= Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/Main/Exploration/RBID.i -Sk "pubmed:19788804" \
| HfdSelect -Kh $EXPLOR_AREA/Data/Main/Exploration/biblio.hfd \
| NlmPubMed2Wicri -a SrasV1
| This area was generated with Dilib version V0.6.33. |  |